This insight has left me perplexed just as much as you (probably). This may require some time to sort out my thoughts and dig deeper into both bands' styles and discographies before cementing my final thoughts.
Radiohead influence on Muse kind of ends at Black Holes really. So makes sense that he doesn't like Radiohead/likes Black Holes and The Resistance.
I'd actually have to say that the Radiohead influence stopped on Absolution. It was pretty evident for Showbiz and Origin of Symmetry, but not for Absolution and beyond. At that point they had really ventured into their own over-the-top sound and so now it can really be said that they're different bands.
Back when I'd get really down often, I would listen to A Wolf at the Door a lot. So much that when I mentioned anything about wolves to someone they'd automatically go "Are you okay?" Lol..I'm a creep.. I'm a weirdoooooo.